PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G11930.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 450aa    MW: 49334.9 Da    PI: 9.1673
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G11930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.3e-13105161155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  LPERR05G11930.2 105 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 161
                      57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-14105171IPR016177DNA-binding domain
PfamPF008471.6E-8105161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-12106170IPR001471AP2/ERF domain
PROSITE profilePS5103218.228106169IPR001471AP2/ERF domain
SMARTSM003802.2E-18106175IPR001471AP2/ERF domain
PRINTSPR003674.9E-5107118IPR001471AP2/ERF domain
PRINTSPR003674.9E-5151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MASPGPAAGM QQQKLEAVAV GGEGLGAAGA EWGRGMQQKV EVVAAAAAAA GGEGPVLGAA  60
GAGSVAEQVV APPVRRPVAA RKERVCTAKE RISRMPPCAA GKRSSIYRGV TRHRWTGRYE  120
AHLWDKSTWN QNQNKKGKQG AYDDEEAAAR AYDLAALKYW GAGTQINFPV SDYARDLEEM  180
QMISKEDYLV SLRRKSSAFS RGLPKYRGLP RQLHNSRWDA SLGHLLGKDI MLDGKFAGTF  240
GLERKIDLTN YIRWWLPKKT RQPDTSKVEE ITDEIRAIES SMQQTEPYKL PSLGLHFKPS  300
SEGLSACDIL SQSDAFKSFS VKSTKLSEEC TFSKEIEEGK TITPVPATGH DTTAVDMNVN  360
ELLVQRAPYT LAPVTAQMKN TWNPADPSAD PLFWSNFILP SSQPVTMATI ATTTFAKNEV  420
GDNILHVYGF PSSGLLRIYQ QRFNIGINYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK26e-98AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D9WG280.0A0A0D9WG28_9ORYZ; Uncharacterized protein
STRINGBGIOSGA019793-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-93AP2 family protein